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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14370477_14370636_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14370477 - 14370636
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTATTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
100
1.24
0.5
100
0
Major PPT
70.4
0.46
0.9
66.2
39
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163