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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14424621_14424922_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14424621 - 14424922
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTCACTTTACT
Flanking Amino Acid:
RDCPTPMGVKGKKELPDSKL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
85.7
0.8
0.6
81.4
23.6
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
59.9
0.39
1.9
79.03
42.5

Associated Gene:

Gene:
PTGS2
Ensembl Gene ID:
ENSAPLG00000013877
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014480
14422955 - 14428422
5468