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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14425105_14425797_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14425105 - 14425797
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
PGFTKALGHGVDLNHIYGET
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
35.1
-1.7
3.2
40.2
45.4
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
PTGS2
Ensembl Gene ID:
ENSAPLG00000013877
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014480
14422955 - 14428422
5468