About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14533871_14534766_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14533871 - 14534766
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
ACTCATTGAATT
Flanking Amino Acid:
TLLMKLQQNMGVVIAAAVFA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71
35.7
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
82.4
0.73
0.8
81.2
36.5
Minor 5ss
46.1
-0.4
2.5
52.3
45
Minor BPS
49.4
0.04
1.6
65.66
39

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922