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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14534860_14538885_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14534860 - 14538885
Intron Length:
4026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTCACTTGATT
Flanking Amino Acid:
DIHIAEELNTVDICPVIENT
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.6
0.53
1
67.1
39.2
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
63.4
0.5
1.5
78.77
37

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922