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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14541622_14543176_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14541622 - 14543176
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TAAAATTGAAAC
Flanking Amino Acid:
ISDIKVLTQLSQGSSHRSTA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
45.4
-0.3
1.7
53.1
37.1

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922