About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14544631_14544765_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14544631 - 14544765
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTGCTTATTT
Flanking Amino Acid:
CRTYDVQDPKSSAKPADWKY
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.8
0.76
0.8
84.1
30.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.4
0.37
2
79.24
43.6

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922