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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14544803_14545825_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
14544803 - 14545825
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTAAGTAGTGAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTTAAGT
Flanking Amino Acid:
AALQVCSATKKIVCRTYDVQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
54
0.09
1.2
53.6
44.7
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
81.4
1.06
1.5
95.57
31.2

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922