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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14547174_14547553_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14547174 - 14547553
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACAG
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATA
Flanking Amino Acid:
EEWITAHASQVSRMLPGGLL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
53.4
45.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.63
1
82.8
32.3
Minor 5ss
35.5
-1.7
3.4
46.9
48.4
Minor BPS
66.7
0.52
1.5
77.76
32.3

Associated Gene:

Gene:
ODR4
Ensembl Gene ID:
ENSAPLG00000014252
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014906
14492311 - 14548232
55922