Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14563371_14564109_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14563371 - 14564109

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTTTATCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

GCTTTTTTATCA

Flanking Amino Acid:

LLLTNLRTIQGILERSETET

Intron Amino Acid Position:

862

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

77.9

36.9

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

81.6

0.71

0.9

81.4

Minor 5ss

40.5

-1.1

3.2

58.3

46.4

Minor BPS

59.8

0.3

1.6

66.98

Associated Gene:

Gene:

TPR

Ensembl Gene ID:

ENSAPLG00000012730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023564

14549216 - 14591565

42350

ENSAPLT00000013371

14549216 - 14592471

43256