About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14566357_14567037_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14566357 - 14567037
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTCACT
Flanking Amino Acid:
RKAVENMEQQLLELKKSLTT
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
81.9
28.6
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
67.6
0.63
1.7
85.39
35.1

Associated Gene:

Gene:
TPR
Ensembl Gene ID:
ENSAPLG00000012730
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013371
14549216 - 14592471
43256
ENSAPLT00000023564
14549216 - 14591565
42350