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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14579328_14580575_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14579328 - 14580575
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
NQDSQDSIGEGVTQGEYTPM
Intron Amino Acid Position:
1937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
TPR
Ensembl Gene ID:
ENSAPLG00000012730
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023564
14549216 - 14591565
42350
ENSAPLT00000013371
14549216 - 14592471
43256