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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14585575_14586195_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14585575 - 14586195
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAT
Flanking Amino Acid:
HRTDGFAEAIHSPQVAGVPR
Intron Amino Acid Position:
2194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.8
0.76
0.7
80.2
31.8
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
67.5
0.63
1.3
80.79
34.3

Associated Gene:

Gene:
TPR
Ensembl Gene ID:
ENSAPLG00000012730
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023564
14549216 - 14591565
42350
ENSAPLT00000013371
14549216 - 14592471
43256