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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14593916_14594121_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14593916 - 14594121
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTTATTAA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTGCAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAATG
Flanking Amino Acid:
RINPYPSGILFLRKEVKMTA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.2
60.3
34.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
51.9
0.04
1.8
63.1
43
Minor 5ss
43.7
-0.7
2.6
54
43.6
Minor BPS
57.2
0.09
1.7
60.57
42.2

Associated Gene:

Gene:
PRG4
Ensembl Gene ID:
ENSAPLG00000012642
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013172
14592676 - 14606627
13952