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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14593919_14594130_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14593919 - 14594130
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATCTTAT
5'SS Class:
weak_major
3'SS Sequence:
GTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAATG
Flanking Amino Acid:
QTVRINPYPSGVLRKEVKMT
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
67.9
39.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
64
0.47
2.1
75.5
40.6
Minor BPS
57.2
0.09
1.7
60.57
42.2

Associated Gene:

Gene:
PRG4
Ensembl Gene ID:
ENSAPLG00000012642
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033480
14592676 - 14608711
16036