Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14594311_14595143_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14594311 - 14595143

Intron Length:

833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTACT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTCTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTTTAATT

Flanking Amino Acid:

RPESVYFIKRDGNMQQYVYR

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

86.2

29.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.9

0.61

0.8

74.5

35.7

Minor 5ss

44.5

-0.6

2.5

60.9

43.5

Minor BPS

79.8

1.01

88.33

30.2

Associated Gene:

Gene:

PRG4

Ensembl Gene ID:

ENSAPLG00000012642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033480

14592676 - 14608711

16036

ENSAPLT00000013172

14592676 - 14606627

13952