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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14596003_14596238_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14596003 - 14596238
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CCCCTCCCACCT
Flanking Amino Acid:
LPNGTLAVFRGHYYWLLNGR
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
69.1
0.43
0.8
62.6
27.2
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
38.7
-0.7
1.9
49.26
44.2

Associated Gene:

Gene:
PRG4
Ensembl Gene ID:
ENSAPLG00000012642
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013172
14592676 - 14606627
13952