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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14596321_14604245_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14596321 - 14604245
Intron Length:
7925

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCAAAACAC
5'SS Class:
major
3'SS Sequence:
TGCAGTGGGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTAATCTGAACT
Flanking Amino Acid:
ERYGKCCPDYTDEKDLCSGK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.4
58.6
42.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
45.5
-0.2
1.2
36.5
44.2
Minor 5ss
23.7
-3
4
37.7
40.3
Minor BPS
60.9
0.42
1.5
74.31
42.1

Associated Gene:

Gene:
PRG4
Ensembl Gene ID:
ENSAPLG00000012642
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013172
14592676 - 14606627
13952