About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14606597_14608617_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14606597 - 14608617
Intron Length:
2021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
CGTGTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TGTCGTGTGATT
Flanking Amino Acid:
LTLIQEVSSQDLWSCTGRCG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
67.8
0.44
1
75
30.1
Major PPT
66.9
0.38
1
62.7
43.1
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
43.3
-0.4
2.3
64.52
40.7

Associated Gene:

Gene:
PRG4
Ensembl Gene ID:
ENSAPLG00000012642
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033480
14592676 - 14608711
16036