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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14638423_14639531_R

Intron Information:

Intron Rank:
107
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14638423 - 14639531
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TGTTTATTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTCTGTTTATTC
Flanking Amino Acid:
PPNYQREPLSGFCLKNCPAN
Intron Amino Acid Position:
5479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.5
0.71
0.9
73.7
40.8
Minor 5ss
48.5
-0.1
2.4
59.5
45
Minor BPS
47.3
-0.2
2
56.83
43.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258