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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14640379_14642694_R

Intron Information:

Intron Rank:
105
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14640379 - 14642694
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATCT
Flanking Amino Acid:
GYEARNDRCVDIDECETRDT
Intron Amino Acid Position:
5397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
62.8
0.48
1.6
76.96
39.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343