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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14647226_14648029_R

Intron Information:

Intron Rank:
103
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14647226 - 14648029
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTTGCCTTATTG
Flanking Amino Acid:
MTKAENGTCIDIDECRDGTH
Intron Amino Acid Position:
5237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.1
0.75
0.9
77.4
36.6
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
57.1
0.08
1.8
62.57
46

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343