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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14648156_14648494_R

Intron Information:

Intron Rank:
102
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14648156 - 14648494
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
GFQLKGRKCMDVNECRQNVC
Intron Amino Acid Position:
5195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.6
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.1
0.52
1.1
81.1
34.5
Minor 5ss
43.7
-0.7
2.8
52.8
44.2
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258