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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14648609_14648990_R

Intron Information:

Intron Rank:
101
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14648609 - 14648990
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGAGT
5'SS Class:
major
3'SS Sequence:
TTTTGTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTGTCCAACA
Flanking Amino Acid:
RRTADGFSCQDINECQEPNS
Intron Amino Acid Position:
5157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
67.2
43.4
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
78.7
0.65
0.9
74.4
35.3
Minor 5ss
36.4
-1.5
3
49.5
46.4
Minor BPS
48.8
-0
2.2
72.2
40

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258