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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14649126_14649368_R

Intron Information:

Intron Rank:
100
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14649126 - 14649368
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
TISADGRTCQDIDECALGGH
Intron Amino Acid Position:
5112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.5
0.84
0.8
81.9
33.4
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343