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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14649489_14650859_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14649489 - 14650859

Intron Length:

1371

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGATG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTCTAATA

Flanking Amino Acid:

GLDSIGPYCTDEDECVVRNP

Intron Amino Acid Position:

5072

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

75.3

40.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

87.9

0.85

0.7

80.5

31.6

Minor 5ss

35.9

-1.6

3.2

48.4

47.4

Minor BPS

66.6

0.52

1.6

79.19

30.8

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258