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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14651290_14652779_R

Intron Information:

Intron Rank:
97
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14651290 - 14652779
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTGCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGCTATTT
Flanking Amino Acid:
LQSLADVNVKDYTEDYIQTG
Intron Amino Acid Position:
4972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.5
0.78
0.8
81.9
34.4
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
43.8
-0.3
2.4
68.65
42.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343