Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14652902_14653211_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14652902 - 14653211

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTTAGCTAC

5'SS Class:

major

3'SS Sequence:

TTAAAATTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TGTTTTATAAAT

Flanking Amino Acid:

KRETQVEFATGEILRMTHIA

Intron Amino Acid Position:

4931

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.2

63.2

37.9

Major BPS

78.6

0.71

78.6

Major PPT

65.2

0.34

58.4

41.6

Minor 5ss

40.6

-1

2.8

48.7

41.8

Minor BPS

58.9

0.36

1.7

78.63

37.2

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258