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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14660047_14661144_R

Intron Information:

Intron Rank:
90
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14660047 - 14661144
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
SVMCNIRPCPVCGTIISSKV
Intron Amino Acid Position:
4642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
77.8
0.63
0.8
77.2
31.5
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343