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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14661316_14661517_R

Intron Information:

Intron Rank:
89
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14661316 - 14661517
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AATAAAATAAAA
Flanking Amino Acid:
VRSCHNKLCPVDGNWSEWGL
Intron Amino Acid Position:
4585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
41.6
-0.6
2
53.38
37

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343