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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14661689_14662212_R

Intron Information:

Intron Rank:
88
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14661689 - 14662212
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCCCACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
ATGTTCCAAACA
Flanking Amino Acid:
VLVRVPLIVQVHGGFSEWLE
Intron Amino Acid Position:
4528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
66
40.2
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
80.8
0.69
0.8
74.7
28.8
Minor 5ss
31.1
-2.2
3.3
32.2
42.4
Minor BPS
49.7
-0
2
65.82
40.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343