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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14663472_14664199_R

Intron Information:

Intron Rank:
86
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14663472 - 14664199
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AGTTATATGATT
Flanking Amino Acid:
NGSLAIYGTVNEDAGDYKCV
Intron Amino Acid Position:
4411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
77.6
0.62
0.8
74.9
35.5
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
48.2
-0
1.7
67.87
36.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258