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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14665482_14665857_R

Intron Information:

Intron Rank:
83
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14665482 - 14665857
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TATGATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TATATCAAAACT
Flanking Amino Acid:
DGDLILDNVIPEDSGNYTCI
Intron Amino Acid Position:
4231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
72.4
32.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
80.9
0.7
0.9
77.4
41.1
Minor 5ss
43.1
-0.8
2.8
56.6
41.9
Minor BPS
50.3
0.09
2
74.68
41.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258