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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14666049_14666403_R

Intron Information:

Intron Rank:
82
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14666049 - 14666403
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
AATCTTTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAT
Flanking Amino Acid:
SSSSMDLIVHIPPKIRSTEV
Intron Amino Acid Position:
4167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
61.2
43.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
0.9
72.5
36.7
Minor 5ss
34.3
-1.8
3.2
45.8
43.4
Minor BPS
68.9
0.67
1.5
84.9
34.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343