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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14666674_14666945_R

Intron Information:

Intron Rank:
81
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14666674 - 14666945
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTGT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTCTAAATA
Flanking Amino Acid:
ALGKIKLKVQVPPVIKPHLK
Intron Amino Acid Position:
4077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.1
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
39.9
-1.1
3.3
58.3
46.4
Minor BPS
65.3
0.48
1.7
74.1
38.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343