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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14667081_14667222_R

Intron Information:

Intron Rank:
80
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
14667081 - 14667222
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTCT
5'SS Class:
weak_minor
3'SS Sequence:
ATATTTGTTTTAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTGCTTATAT
Flanking Amino Acid:
QKEGINVITAGNGYMVLPSG
Intron Amino Acid Position:
4032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65
41.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.1
0.59
0.9
74.2
40.7
Minor 5ss
78.4
0.96
1.6
83.4
35.2
Minor BPS
53.4
0.19
2.2
76.89
45.5

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343