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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14667361_14667624_R

Intron Information:

Intron Rank:
79
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14667361 - 14667624
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTTGTTGTACA
Flanking Amino Acid:
AHRHATLHVQEPPVIQTQPG
Intron Amino Acid Position:
3986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.4
43.8
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
84.3
0.77
0.9
79.9
37.7
Minor 5ss
36.9
-1.5
3
39.2
46
Minor BPS
49.3
-0
2.2
71.77
40.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343