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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14667733_14667958_R

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14667733 - 14667958
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
ATCTCTGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTTCTCTATCT
Flanking Amino Acid:
RGDGYRILSSGAVEIPAAQL
Intron Amino Acid Position:
3950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
79
0.72
1
69
38.9
Major PPT
67.5
0.39
1
62.6
38.2
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
58.8
0.35
1.9
81.48
40

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258