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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14668109_14668150_R

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14668109 - 14668150
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCAAGTAAC
5'SS Class:
major
3'SS Sequence:
CCCCCATCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGATCTTCATTT
Flanking Amino Acid:
ISNDEQQIKVTDEATDVLVT
Intron Amino Acid Position:
3880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
74.6
38.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
63.3
0.3
0.8
56.8
25.9
Minor 5ss
27
-2.6
3.7
33.2
35.4
Minor BPS
51.1
0.11
1.8
69.8
41.4

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343