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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14668252_14668609_R

Intron Information:

Intron Rank:
76
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14668252 - 14668609
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTAAAATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CAATCTTAAAAT
Flanking Amino Acid:
LSVDQNQNTYRFVYGSFMIL
Intron Amino Acid Position:
3856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
46.5
-0.2
1.7
53.9
43.6
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
52.1
0.15
1.8
67
43.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343