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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14668767_14669179_R

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14668767 - 14669179
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
TGTTTGTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGATTCTGAATA
Flanking Amino Acid:
ERKRIDLQVLVPPTIAPGHT
Intron Amino Acid Position:
3802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
74
34.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
75.4
0.57
0.8
73.8
36.8
Minor 5ss
35.9
-1.6
3.7
52.6
45.6
Minor BPS
64
0.44
1.4
69.76
36.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258