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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14671629_14674521_R

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14671629 - 14674521
Intron Length:
2893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
TCTTTCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATAAAATTAAAT
Flanking Amino Acid:
SWLKNGELLEGTPRVRILSS
Intron Amino Acid Position:
3664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.1
0.65
0.7
78
23.9
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
48.5
-0
1.9
68.56
40.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343