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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14674659_14675434_R

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14674659 - 14675434
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCTTCTTAATT
Flanking Amino Acid:
DDKEYLVRVHVPPNIAGTSG
Intron Amino Acid Position:
3618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.8
0.63
1
73.8
40
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
83.3
1.12
1
91.07
32.9

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343