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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14677319_14677877_R

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14677319 - 14677877
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAA
U12 Branch Point Sequence:
GAGTCAGTAAAC
Flanking Amino Acid:
ISKHFSLKVLEPPHINGSDQ
Intron Amino Acid Position:
3527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
75.7
36.7
Major BPS
54
0.1
1.1
61.6
34.2
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
39.9
-1.1
3.3
47.1
48.3
Minor BPS
44.4
-0.4
2.3
55.13
42.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343