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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14678684_14678841_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14678684 - 14678841
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
ATTTTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TACAGCTCAACT
Flanking Amino Acid:
IRLLSAGQILRLARVQISDA
Intron Amino Acid Position:
3401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.5
0.66
0.7
78.5
29.6
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
50
0.08
2
70.34
46

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258