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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14679026_14680575_R

Intron Information:

Intron Rank:
66
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14679026 - 14680575
Intron Length:
1550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCACAAAATGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCTTTTCAACA
Flanking Amino Acid:
EDQIFNLNVYVPPAITNNKG
Intron Amino Acid Position:
3340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
56
0.14
1
49
38
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
59.7
0.3
1.5
66.33
40.9

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258