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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14680701_14681324_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14680701 - 14681324
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTTTTATGACC
Flanking Amino Acid:
TVASDDLQRIRVTPDGSTLT
Intron Amino Acid Position:
3298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
75.5
0.57
0.8
69.8
30.3
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
58
0.23
1.6
70.78
34.3

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343