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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14681485_14682864_R

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14681485 - 14682864
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTACATTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTCTTCCTACCA
Flanking Amino Acid:
AQKSYVLSIQVPPNIVGSEM
Intron Amino Acid Position:
3245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
66.8
0.38
0.9
57.9
37.3
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
48.9
-0
2
62.87
43.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343