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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14683015_14683246_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14683015 - 14683246
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACATTC
5'SS Class:
major
3'SS Sequence:
TACATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATATTT
Flanking Amino Acid:
LAWFKNGKPLENSDSPEVHI
Intron Amino Acid Position:
3195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
75.9
34.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.4
0.62
0.9
73.7
40.3
Minor 5ss
48
-0.2
2.9
68.1
42.9
Minor BPS
49.6
0.05
2
75.01
41.5

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343