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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14683379_14683508_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14683379 - 14683508
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCAATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TTCCATTCAATT
Flanking Amino Acid:
DDKNFHLNVYVPPHIEGPEQ
Intron Amino Acid Position:
3151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
75.8
35.2
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
73.5
0.53
0.9
67.1
38.5
Minor 5ss
37.7
-1.4
3
45.4
43.9
Minor BPS
50.9
0.11
1.7
70.49
40.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258